Data in life

🌟Blog status🌟

Welcome to my blog on selected cheminformatics, machine learning (ML) and data science projects in drug discovery.


Using Molstar in Quarto

Apr 6, 2024
Jennifer HY Lin
1 min

Random forest classifier

Series 2.2.1 - more on imbalanced dataset
Jan 17, 2024
Jennifer HY Lin
13 min

Random forest

Series 2.2 - model building, imbalanced dataset, feature importances & hyperparameter tuning
Nov 22, 2023
Jennifer HY Lin
24 min

Decision tree

Series 2.1.1 - data collection and preprocessing
Sep 19, 2023
Jennifer HY Lin
12 min

Decision tree

Series 2.1.2 - data preprocessing and transformation
Sep 19, 2023
Jennifer HY Lin
12 min

Decision tree

Series 2.1.3 - model building and estimating experimental errors
Sep 19, 2023
Jennifer HY Lin
14 min

Molecular visualisation (Molviz) web application

Using Shiny for Python web application framework - part 2
Aug 10, 2023
Jennifer HY Lin
12 min

Molecular visualisation (Molviz) web application

Interactive data table - part 1
Aug 10, 2023
Jennifer HY Lin
5 min

Working with scaffolds in small molecules

Manipulating SMILES strings
Jul 6, 2023
Jennifer HY Lin
19 min

Shinylive app in Python

Embedding app in Quarto document & using pyodide.http to import csv files
May 24, 2023
Jennifer HY Lin
8 min

Shinylive app in Python

Embedding app in Quarto document for compounds in COVID-19 clinical trials
May 8, 2023
Jennifer HY Lin
23 min

Shinylive app in Python

Data preparation for compounds in COVID-19 clinical trials
May 8, 2023
Jennifer HY Lin
11 min

Shiny app in R

Small molecules in ChEMBL database
Apr 7, 2023
Jennifer HY Lin
6 min

Small molecules in ChEMBL database

Series 1.3 - Re-training & re-evaluation with scikit-learn
Mar 17, 2023
Jennifer HY Lin
10 min

Small molecules in ChEMBL database

Series 1.2 - Cross-validation & hyper-parameter tuning with scikit-learn
Mar 7, 2023
Jennifer HY Lin
15 min

Pills dataset - Part 3

Using Rust for data visualisation
Feb 14, 2023
Jennifer HY Lin
10 min

Pills dataset - Part 2

Text cleaning using Polars & visualising pills with Plotly
Jan 31, 2023
Jennifer HY Lin
13 min

Pills dataset - Part 1

Web scraping, Polars & Pandas dataframe libraries
Jan 21, 2023
Jennifer HY Lin
11 min

Small molecules in ChEMBL database

Series 1.1 - Polars dataframe library and machine learning in scikit-learn
Jan 4, 2023
Jennifer HY Lin
29 min

Molecular similarities in selected COVID-19 antivirals

Using RDKit’s similarity map and fingerprint generator
Nov 19, 2022
Jennifer HY Lin
28 min

PhD project

A research saga that went through COVID
Oct 23, 2022
Jennifer HY Lin
6 min

Publications

Oct 23, 2022
Jennifer HY Lin
1 min

Long COVID - an update

PDF table scraping, bar graph, interactive map & wordcloud
Sep 19, 2022
Jennifer HY Lin
9 min

Table scraping from PDF

Using tabula-py in Python
Sep 15, 2022
Jennifer HY Lin
3 min

Blog move

Aug 6, 2022
Jennifer HY Lin
1 min

Phenotypes associated with rare diseases

Aug 2, 2022
Jennifer HY Lin
7 min

Embracing social network

Jul 15, 2022
Jennifer HY Lin
1 min

Natural history of rare diseases - malformation syndrome

Jun 27, 2022
Jennifer HY Lin
1 min

Update on portfolio

Jun 13, 2022
Jennifer HY Lin
1 min

Long COVID data in SQL

Jun 5, 2022
Jennifer HY Lin
1 min

Portfolio projects

May 31, 2022
Jennifer HY Lin
0 min

Long COVID dashboard

May 31, 2022
Jennifer HY Lin
1 min

Drugs in rare diseases

May 28, 2022
Jennifer HY Lin
3 min

Focussing on data analytics

Apr 15, 2022
Jennifer HY Lin
0 min

The beginning of the data science journey

Jan 28, 2022
Jennifer HY Lin
3 min

SERCA project

Jan 24, 2022
Jennifer HY Lin
2 min
No matching items